PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26262.8 Da    PI: 8.4768
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00738.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.5e-251261251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Pahal.I00738.1 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61
                    89********************************************9986 PP

2K-box501.3e-17921741799
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +   a+L++e+ +   ++R+l Ge+L++Ls+++Lq+Le+ Le++l ++R++K++ +l++i+ l +k  +l een +L+++l+
  Pahal.I00738.1  92 DDSTCARLREELAEASLKLRQLRGEELQRLSVQQLQELEKTLESGLGSVRKTKSQKILDEINGLERKRMQLIEENSRLKEQLQ 174
                     4567899************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-33362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.137363IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24525IPR002100Transcription factor, MADS-box
CDDcd002652.93E-37571No hitNo description
SuperFamilySSF554555.89E-29584IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.4289181IPR002487Transcription factor, K-box
PfamPF014862.9E-1695173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA  60
SSSMNQIIDR YDCHSKTLQK SEAPAQLQSH VDDSTCARLR EELAEASLKL RQLRGEELQR  120
LSVQQLQELE KTLESGLGSV RKTKSQKILD EINGLERKRM QLIEENSRLK EQLQVTRMTR  180
MEMQLGADSE VVYEEGQSSE SVTNASYPRP SADTDDGGSD TSLRLGLPLF SSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A6e-18571268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B6e-18571268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C6e-18571268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D6e-18571268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A6e-18571268Myocyte-specific enhancer factor 2A
3kov_B6e-18571268Myocyte-specific enhancer factor 2A
3kov_I6e-18571268Myocyte-specific enhancer factor 2A
3kov_J6e-18571268Myocyte-specific enhancer factor 2A
3mu6_A6e-18574271Myocyte-specific enhancer factor 2A
3mu6_B6e-18574271Myocyte-specific enhancer factor 2A
3mu6_C6e-18574271Myocyte-specific enhancer factor 2A
3mu6_D6e-18574271Myocyte-specific enhancer factor 2A
3p57_A6e-18571268Myocyte-specific enhancer factor 2A
3p57_B6e-18571268Myocyte-specific enhancer factor 2A
3p57_C6e-18571268Myocyte-specific enhancer factor 2A
3p57_D6e-18571268Myocyte-specific enhancer factor 2A
3p57_I6e-18571268Myocyte-specific enhancer factor 2A
3p57_J6e-18571268Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382090.0BT038209.1 Zea mays full-length cDNA clone ZM_BFb0217J06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985436.11e-148PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_004985437.11e-148PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_004985438.11e-148PREDICTED: MADS-box transcription factor 47-like isoform X1
RefseqXP_004985439.11e-148PREDICTED: MADS-box transcription factor 47-like isoform X1
SwissprotQ5K4R01e-127MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLK4AEQ11e-148K4AEQ1_SETIT; Uncharacterized protein
STRINGSb01g044810.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-66MIKC_MADS family protein